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Measuring metabolites in index clinical DDI studies

A key drug development safety consideration is whether the drug candidate will interact with co-medications. Drug-drug interaction (DDI) studies are used to help assess this risk.

These studies quantify the impact of the drug candidate on key drug-metabolizing enzymes. The most studied metabolic enzymes are the cytochrome P450 (CYP) enzyme family members.

Recommended index substrates are drugs known to be metabolized by specific CYPs. Thus, these drugs serve as probes that can detect if the CYP is being induced or inhibited by the candidate drug.

EnzymeSensitive index substrates unless otherwise noted
CYP1A2caffeine, tizanidine
CYP2B6(a)
CYP2C8repaglinide(b)
CYP2C9tolbutamide(c), S-warfarin(c)
CYP2C19lansoprazole(c,d), omeprazole
CYP2D6desipramine, dextromethorphan, nebivolol
CYP3Amidazolam, triazolam

Source: https://www.fda.gov/drugs/drug-interactions-labeling/drug-development-and-drug-interactions-table-substrates-inhibitors-and-inducers#table2-1

When designing clinical drug-drug interaction studies, a key consideration is whether measuring the metabolites of the probe substrates used is necessary. Measuring the products of metabolism may give further insights into how a drug interaction might affect safety or effectiveness. It can also provide more information about the mechanism of the interaction. Ultimately, all this information can help make sense of the DDI study results.

The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use (ICH) has published the final version of the harmonized drug-drug interaction (DDI) guideline (ICH M12). Check out this blog for our summary of the ICH M12 guidance and our recommendations on how it may impact your DDI package.

At Certara, our experts in clinical pharmacology, DMPK (drug metabolism pharmacokinetics), and PBPK (physiologically-based pharmacokinetic modeling) collaborate via our Center for Excellence in Drug Interaction Science to help our clients perform DDI risk assessments. The question of drug metabolite measurement in DDI studies was recently explored in an article by several authors from this center, published in the journal Metabolites.

The Certara Drug Interaction Database (DIDB) is the largest scientist-curated collection of qualitative and quantitative human in vitro and clinical (in vivo) information related to various extrinsic and intrinsic factors that can affect drug exposure. Using this database, studies with index substrates from the ICH M12 guideline for CYP1A2, 2B6, 2C8, 2C9, 2C19, 2D6, and 3A were reviewed.

For each probe substrate, the frequency of metabolite measurements in the studies was calculated, and a correlation analysis between the change in the plasma exposure of the index substrates and marker metabolites was performed. In total, 3261 individual index DDI studies were available, and 45% of the studies measured at least one metabolite. For individual substrates, the frequency of metabolite measurement ranged from 11% to > 80%.

The analysis indicated that measuring metabolites for substrates like caffeine (CYP1A2), bupropion (CYP2B6), omeprazole (CYP2C19), and dextromethorphan (CYP2D6) enhanced sensitivity in detecting DDIs or reduced intrasubject variability. Including metabolite measurements for omeprazole can offer mechanistic insights into the effects of the interacting compound on both CYP3A4 and CYP2C19. However, for substrates like midazolam, measuring metabolites did not provide a clear benefit for interpreting the outcomes of drug interaction studies.

Therefore, some metabolites are worth measuring, and some aren’t. Knowing this distinction can help your team get the best ROI on your clinical pharmacology program.

Read the full article here

Metabolite Measurement in Index Substrate Drug Interaction Studies: A Review of the Literature and Recent New Drug Application Reviews

If you need help designing your DDI studies, our experts can help. You can email them at ddi@certara.com

About the authors

Jingjing Yu, MD, PhD
By: Jingjing Yu, MD, PhD

Dr. Yu joined Certara in 2023 following the acquisition of the University of Washington Drug Interaction Solutions program. With over 15 years of experience in drug metabolism and clinical pharmacology, she brings a unique expertise in the field of drug interactions, gained through her work in both academia and industry. At Certara, Dr. Yu is Director at the Drug Interaction Solutions and a core member of Center of Excellence in Drug Interaction Science. She is also an Affiliate Associate Professor of the Department of Pharmaceutics at the University of Washington in Seattle, WA.

Isabelle Ragueneau-Majlessi, MD, MS
By: Isabelle Ragueneau-Majlessi, MD, MS

Dr. Ragueneau is a Clinical Professor Emeritus from the University of Washington where she co-founded the Drug Interaction Database (DIDB) over 25 years ago. At Certara, she is the head of the Drug Interaction Solutions program and leads the Center of Excellence in Drug Interaction Science. She is a clinical pharmacologist by training, with a deep expertise in the evaluation of drug-drug interactions mechanisms and clinical significance. In 2022, she received the Gary Neil prize for innovation in drug development from the ASCPT in recognition of her extensive work with the DIDB and the impact of the tool on drug interaction research.

Iain Gardner, PhD
By: Iain Gardner, PhD

Dr. Gardner has been at Certara since 2011. He leads the science team that is responsible for further developments of the population-based physiologically-based PK/PD simulators to meet the needs of Simcyp Consortium members. Before joining Certara, he spent 12 years working in the Pharmacokinetics, Dynamics, and Metabolism Department at Pfizer Global Research & Development in the UK and the US. In this role, Gardner was responsible for optimizing the pharmacokinetics (PK) properties of compounds for Drug Discovery projects and resolving any ADME issues for projects later in Development. He is particularly interested in the prediction of human PK and the application of in silico physiologically based PK approaches to projects. Before joining Pfizer, Dr. Gardner worked as a postdoctoral scientist at the University of Toronto, Canada, and Imperial College, UK investigating the links between the metabolism and toxicity of drugs and chemicals. He earned his PhD at the University of Sheffield.